BMRB Entry 16661
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR16661
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Title: Pf ACP with Transit Peptide PubMed: 19768685
Deposition date: 2010-01-04 Original release date: 2010-01-12
Authors: Gallagher, John; Prigge, Sean
Citation: Gallagher, John; Prigge, Sean. "Plasmodium falciparum acyl carrier protein crystal structures in disulfide-linked and reduced states and their prevalence during blood stage growth." Proteins 78, 575-588 (2010).
Assembly members:
TP-ACP, polymer, 121 residues, Formula weight is not available
Natural source: Common Name: malaria parasite P. falciparum Taxonomy ID: 5833 Superkingdom: Eukaryota Kingdom: not available Genus/species: Plasmodium falciparum
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
TP-ACP: FKNTQKDGVSLQILKKKRSN
QVNFLNRKNDYNLIKNKNPS
SSLKSTFDDIKKIISKQLSV
EEDKIQMNSNFTKDLGADSL
DLVELIMALEEKFNVTISDQ
DALKINTVQDAIDYIEKNNK
Q
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 238 |
| 15N chemical shifts | 119 |
| 1H chemical shifts | 119 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | TP-ACP | 1 |
Entities:
Entity 1, TP-ACP 121 residues - Formula weight is not available
Represents trafficking intermediate with signal peptide removed, containing residues 18-137 of Genbank AAC71866.
| 1 | PHE | LYS | ASN | THR | GLN | LYS | ASP | GLY | VAL | SER | ||||
| 2 | LEU | GLN | ILE | LEU | LYS | LYS | LYS | ARG | SER | ASN | ||||
| 3 | GLN | VAL | ASN | PHE | LEU | ASN | ARG | LYS | ASN | ASP | ||||
| 4 | TYR | ASN | LEU | ILE | LYS | ASN | LYS | ASN | PRO | SER | ||||
| 5 | SER | SER | LEU | LYS | SER | THR | PHE | ASP | ASP | ILE | ||||
| 6 | LYS | LYS | ILE | ILE | SER | LYS | GLN | LEU | SER | VAL | ||||
| 7 | GLU | GLU | ASP | LYS | ILE | GLN | MET | ASN | SER | ASN | ||||
| 8 | PHE | THR | LYS | ASP | LEU | GLY | ALA | ASP | SER | LEU | ||||
| 9 | ASP | LEU | VAL | GLU | LEU | ILE | MET | ALA | LEU | GLU | ||||
| 10 | GLU | LYS | PHE | ASN | VAL | THR | ILE | SER | ASP | GLN | ||||
| 11 | ASP | ALA | LEU | LYS | ILE | ASN | THR | VAL | GLN | ASP | ||||
| 12 | ALA | ILE | ASP | TYR | ILE | GLU | LYS | ASN | ASN | LYS | ||||
| 13 | GLN |
Samples:
sample_1: TP-ACP, [U-13C; U-15N], 940 uM; D3NaAcetate, [U-2H], 30 mM; CaCl2 20 mM; DTT 5 mM; sodium azide 1 mM; D2O, [U-2H], 10%; H2O 90%
sample_conditions_1: ionic strength: 50 mM; pH: 5.5; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D HNCA | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CO)CA | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CO)CACB | sample_1 | isotropic | sample_conditions_1 |
Software:
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
NMRDraw, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - peak picking
MONTE v2.02, Hitchens, T. K. Lukin, J. A. Zhan, Y. McCallum, S. A. Rule, G. S. - chemical shift assignment
NMR spectrometers:
- Varian INOVA 500 MHz
- Varian INOVA 600 MHz
Related Database Links:
| GB | AAC71866 AAC63959 AAC71866 ETW20884 ETW27965 ETW39040 |
| BMRB | 16506 16529 16530 16531 16532 16533 |
| PDB | |
| EMBL | CDO62314 |
| REF | XP_001349595 XP_012760964 |
Download simulated HSQC data in one of the following formats:
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or all simulated shifts
SPARKY: Backbone
or all simulated shifts