BMRB Entry 16477
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PDB ID:
Entry in NMR Restraints Grid
Validation report in NRG-CING
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR16477
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Title: Solution structure of the transmembrane proximal region of the hepatis C virus E1 glycoprotein. PubMed: 19891955
Deposition date: 2009-09-04 Original release date: 2009-12-11
Authors: Spadaccini, Roberta; D'Errico, Gerardino; D'Alessio, Viviana; Notomista, Eugenio; Bianchi, Alessia; Merola, Marcello; Picone, Delia
Citation: Spadaccini, Roberta; Notomista, Gerardino; Bianchi, Viviana; Merola, Eugenio; Picone, Alessia. "Structural characterization of the transmembrane proximal region of the hepatitis C virus E1 glycoprotein." Biochim. Biophys. Acta 1798, 344-353 (2010).
Assembly members:
e1_peptide, polymer, 29 residues, 3328.988 Da.
Natural source: Common Name: Human Taxonomy ID: 9606 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Homo sapiens
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
e1_peptide: TGHRMAWDMMMNWSPTAALV
VAQLLRIPQ
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 205 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | e1 | 1 |
Entities:
Entity 1, e1 29 residues - 3328.988 Da.
| 1 | THR | GLY | HIS | ARG | MET | ALA | TRP | ASP | MET | MET | ||||
| 2 | MET | ASN | TRP | SER | PRO | THR | ALA | ALA | LEU | VAL | ||||
| 3 | VAL | ALA | GLN | LEU | LEU | ARG | ILE | PRO | GLN |
Samples:
sample_1: e1 1 mM; D2O 20%; hexafluoroisopropanol 80%
sample_2: e1 1 mM; H2O 20%; hexafluoroisopropanol 80%
sample_conditions: pH: 4.5; pressure: 1 atm; temperature: 300 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-1H TOCSY | sample_2 | isotropic | sample_conditions |
| 2D 1H-1H COSY | sample_2 | isotropic | sample_conditions |
| 2D 1H-1H NOESY | sample_2 | isotropic | sample_conditions |
| 2D 1H-1H TOCSY | sample_1 | isotropic | sample_conditions |
| 2D 1H-1H COSY | sample_1 | isotropic | sample_conditions |
| 2D 1H-1H NOESY | sample_1 | isotropic | sample_conditions |
Software:
AMBER, Case, Darden, Cheatham, III, Simmerling, Wang, Duke, Luo, ... and Kollm - refinement
CYANA, Guntert, Mumenthaler and Wuthrich - structure solution
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
NMRView, Johnson, One Moon Scientific - chemical shift assignment, peak picking
NMR spectrometers:
- Bruker DRX 600 MHz