BMRB Entry 17758
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR17758
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry
Title: Backbone 1H and 13C Chemical Shift Assignments of murine prion protein (residues 121-232) in its oxidized state PubMed: 20541558
Deposition date: 2011-07-05 Original release date: 2011-07-14
Authors: Schwalbe, Harald; Schlepckow, Kai
Citation: Gerum, Christian; Schlepckow, Kai; Schwalbe, Harald. "The unfolded state of the murine prion protein and properties of single-point mutants related to human prion diseases" J. Mol. Biol. 401, 7-12 (2010).
Assembly members:
mPrP(121-232), polymer, 114 residues, Formula weight is not available
Natural source: Common Name: Mouse Taxonomy ID: 10090 Superkingdom: Eukaryota Kingdom: Metazoa Genus/species: Mus musculus
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
mPrP(121-232): GSVVGGLGGYMLGSAMSRPM
IHFGNDWEDRYYRENMYRYP
NQVYYRPVDQYSNQNNFVHD
CVNITIKQHTVTTTTKGENF
TETDVKMMERVVEQMCVTQY
QKESQAYYDGRRSS
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 283 |
| 1H chemical shifts | 93 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | murine prion protein (residues 121-232) | 1 |
Entities:
Entity 1, murine prion protein (residues 121-232) 114 residues - Formula weight is not available
Construct constitutes C-terminal domain (residues 121-232). First two residues are a remnant of the N-terminal (his)6 tag.
| 1 | GLY | SER | VAL | VAL | GLY | GLY | LEU | GLY | GLY | TYR | ||||
| 2 | MET | LEU | GLY | SER | ALA | MET | SER | ARG | PRO | MET | ||||
| 3 | ILE | HIS | PHE | GLY | ASN | ASP | TRP | GLU | ASP | ARG | ||||
| 4 | TYR | TYR | ARG | GLU | ASN | MET | TYR | ARG | TYR | PRO | ||||
| 5 | ASN | GLN | VAL | TYR | TYR | ARG | PRO | VAL | ASP | GLN | ||||
| 6 | TYR | SER | ASN | GLN | ASN | ASN | PHE | VAL | HIS | ASP | ||||
| 7 | CYS | VAL | ASN | ILE | THR | ILE | LYS | GLN | HIS | THR | ||||
| 8 | VAL | THR | THR | THR | THR | LYS | GLY | GLU | ASN | PHE | ||||
| 9 | THR | GLU | THR | ASP | VAL | LYS | MET | MET | GLU | ARG | ||||
| 10 | VAL | VAL | GLU | GLN | MET | CYS | VAL | THR | GLN | TYR | ||||
| 11 | GLN | LYS | GLU | SER | GLN | ALA | TYR | TYR | ASP | GLY | ||||
| 12 | ARG | ARG | SER | SER |
Samples:
sample_1: mPrP(121-232), [U-13C; U-15N], 0.2 – 0.5 mM; TSP 1 mM; urea 8 M; H2O 90%; D2O 10%
sample_conditions_1: ionic strength: 0 M; pH: 2.0; pressure: 1 atm; temperature: 298 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D 1H-15N HSQC | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCO | sample_1 | isotropic | sample_conditions_1 |
| 3D CBCA(CO)NH | sample_1 | isotropic | sample_conditions_1 |
| 3D HNCACB | sample_1 | isotropic | sample_conditions_1 |
| 3D HN(CA)CO | sample_1 | isotropic | sample_conditions_1 |
| 3D HNN | sample_1 | isotropic | sample_conditions_1 |
Software:
CARA, Keller and Wuthrich - chemical shift assignment
NMR spectrometers:
- Bruker DRX 600 MHz
- Bruker Avance 600 MHz
- Bruker Avance 700 MHz
- Bruker Avance 800 MHz
Related Database Links:
| BMRB | 15845 16071 16075 16076 16077 16078 16079 16080 16184 16185 16722 16723 17081 17082 17084 17087 17174 17213 17759 |
| PDB | |
| DBJ | BAA08790 BAE28320 BAE28693 BAE29994 BAE34221 |
| EMBL | CAJ18553 |
| GB | AAA39996 AAA39997 AAA39998 AAA41947 AAB30728 |
| REF | NP_001265185 NP_035300 NP_036763 XP_006235124 XP_006984054 |
| SP | P04925 P13852 Q9Z0T3 |