BMRB Entry 18207
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR18207
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Title: A53T alpha-synuclein fibrils PubMed: 23505409
Deposition date: 2012-01-22 Original release date: 2013-04-02
Authors: Lemkau, Luisel; Comellas, Gemma; Lee, Shin; Rikardsen, Lars; Woods, Wendy; George, Julia; Rienstra, Chad
Citation: Lemkau, Luisel; Comellas, Gemma; Lee, Shin; Rikardsen, Lars; Woods, Wendy; George, Julia; Rienstra, Chad. "Site-Specific Perturbations of Alpha-Synuclein Fibril Structure by the Parkinson's Disease Associated Mutations A53T and E46K." PLoS ONE 8, e49750-e49750 (2013).
Assembly members:
A53T_alpha-synuclein_fibrils, polymer, 140 residues, Formula weight is not available
Natural source: Common Name: E. coli Taxonomy ID: 562 Superkingdom: Bacteria Kingdom: not available Genus/species: Escherichia coli
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
A53T_alpha-synuclein_fibrils: MDVFMKGKSKAKEGVVAAAE
KTKQGVAEAAGKTKEGVLYV
GSKTKEGVVHGVTTVAEKTK
EQVTNVGGAVVTGVTAVAQK
TVEGAGSIAAATGFVKKDQL
GKNEEGAPQEGILEDMPVDP
DNEAYEMPSEEGYQDYEPEA
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 185 |
| 15N chemical shifts | 52 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | A53T AS | 1 |
Entities:
Entity 1, A53T AS 140 residues - Formula weight is not available
| 1 | MET | ASP | VAL | PHE | MET | LYS | GLY | LYS | SER | LYS | |
| 2 | ALA | LYS | GLU | GLY | VAL | VAL | ALA | ALA | ALA | GLU | |
| 3 | LYS | THR | LYS | GLN | GLY | VAL | ALA | GLU | ALA | ALA | |
| 4 | GLY | LYS | THR | LYS | GLU | GLY | VAL | LEU | TYR | VAL | |
| 5 | GLY | SER | LYS | THR | LYS | GLU | GLY | VAL | VAL | HIS | |
| 6 | GLY | VAL | THR | THR | VAL | ALA | GLU | LYS | THR | LYS | |
| 7 | GLU | GLN | VAL | THR | ASN | VAL | GLY | GLY | ALA | VAL | |
| 8 | VAL | THR | GLY | VAL | THR | ALA | VAL | ALA | GLN | LYS | |
| 9 | THR | VAL | GLU | GLY | ALA | GLY | SER | ILE | ALA | ALA | |
| 10 | ALA | THR | GLY | PHE | VAL | LYS | LYS | ASP | GLN | LEU | |
| 11 | GLY | LYS | ASN | GLU | GLU | GLY | ALA | PRO | GLN | GLU | |
| 12 | GLY | ILE | LEU | GLU | ASP | MET | PRO | VAL | ASP | PRO | |
| 13 | ASP | ASN | GLU | ALA | TYR | GLU | MET | PRO | SER | GLU | |
| 14 | GLU | GLY | TYR | GLN | ASP | TYR | GLU | PRO | GLU | ALA |
Samples:
sample_1: A53T alpha-synuclein fibrils, [U-13C; U-15N], 36%; H2O 100%
sample_conditions_1: pH: 7.4; temperature: 273 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| NCACX | sample_1 | isotropic | sample_conditions_1 |
| NCOCX | sample_1 | isotropic | sample_conditions_1 |
| CAN(co)CX | sample_1 | isotropic | sample_conditions_1 |
Software:
NMRPipe, Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax - processing
NMRView, Johnson, One Moon Scientific - chemical shift assignment
NMR spectrometers:
- Varian INOVA 750 MHz
Related Database Links:
| BMRB | 16300 16302 16342 16543 16546 16547 16548 16904 16939 17214 17498 17648 17649 17654 17665 17910 18208 18243 18857 18860 19257 19337 19338 19344 19345 19350 19351 25227 25228 |
| PDB | |
| DBJ | BAB29375 BAF82858 BAG73790 |
| EMBL | CAG33339 CAG46454 |
| GB | AAA16117 AAC02114 AAG30302 AAH13293 AAI08276 |
| REF | NP_000336 NP_001009158 NP_001032222 NP_001129014 NP_001139526 |
| SP | P37840 P61139 P61140 P61142 P61143 |