BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules 		Member of WWPDB

BMRB Entry 18303

Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR18303

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Title: 1H, 13C, and 15N Chemical Shift Assignments for PfPMT, a Phosphoethanolamine Methyltransferase from Plasmodium falciparum   PubMed: 22392340

Deposition date: 2012-02-29 Original release date: 2012-03-29

Authors: Bezsonova, Irina; Rujan, Iulian; Maciejewski, Mark; Gorbatyuk, Oksana; Hao, Bing; Arthanari, Hari; Bobenchik, April; Ben Mamoun, Choukri; Hoch, Jeffrey

Citation: Bezsonova, Irina; Rujan, Iulian; Bobenchik, April; Gorbatyuk, Vitaliy; Maciejewski, Mark; Gorbatyuk, Oksana; Hao, Bing; Arthanari, Haribabu; Mamoun, Choukri Ben; Hoch, Jeffrey. "(1)H, (13)C, and (15)N chemical shift assignments for PfPMT, a phosphoethanolamine methyltransferase from Plasmodium falciparum."  Biomol. NMR Assignments 7, 17-20 (2013).

Assembly members:
PfPMT, polymer, 266 residues, Formula weight is not available

Natural source:   Common Name: malaria parasite P. falciparum   Taxonomy ID: 5833   Superkingdom: Eukaryota   Kingdom: not available   Genus/species: Plasmodium falciparum

Experimental source:   Production method: recombinant technology   Host organism: Escherichia coli

Entity Sequences (FASTA):
PfPMT: MTLIENLNSDKTFLENNQYT DEGVKVYEFIFGENYISSGG LEATKKILSDIELNENSKVL DIGSGLGGGCMYINEKYGAH THGIDICSNIVNMANERVSG NNKIIFEANDILTKEFPENN FDLIYSRDAILHLSLENKNK LFQKCYKWLKPTGTLLITDY CATEKENWDDEFKEYVKQRK YTLITVEEYADILTACNFKN VVSKDLSDYWNQLLEVEHKY LHENKEEFLKLFSEKKFISL DDGWSRKIKDSKRKMQRWGY FKATKN

Data sets:
Data typeCount
13C chemical shifts893
15N chemical shifts253
1H chemical shifts1353

Additional metadata:

  • Assembly
  • Samples and Experiments
  • Software
  • Spectrometers
  • Hide all

Assembly:

Entity Assembly IDEntity NameEntity ID
1PfPMT1

Entities:

Entity 1, PfPMT 266 residues - Formula weight is not available

1   METTHRLEUILEGLUASNLEUASNSERASP
2   LYSTHRPHELEUGLUASNASNGLNTYRTHR
3   ASPGLUGLYVALLYSVALTYRGLUPHEILE
4   PHEGLYGLUASNTYRILESERSERGLYGLY
5   LEUGLUALATHRLYSLYSILELEUSERASP
6   ILEGLULEUASNGLUASNSERLYSVALLEU
7   ASPILEGLYSERGLYLEUGLYGLYGLYCYS
8   METTYRILEASNGLULYSTYRGLYALAHIS
9   THRHISGLYILEASPILECYSSERASNILE
10   VALASNMETALAASNGLUARGVALSERGLY
11   ASNASNLYSILEILEPHEGLUALAASNASP
12   ILELEUTHRLYSGLUPHEPROGLUASNASN
13   PHEASPLEUILETYRSERARGASPALAILE
14   LEUHISLEUSERLEUGLUASNLYSASNLYS
15   LEUPHEGLNLYSCYSTYRLYSTRPLEULYS
16   PROTHRGLYTHRLEULEUILETHRASPTYR
17   CYSALATHRGLULYSGLUASNTRPASPASP
18   GLUPHELYSGLUTYRVALLYSGLNARGLYS
19   TYRTHRLEUILETHRVALGLUGLUTYRALA
20   ASPILELEUTHRALACYSASNPHELYSASN
21   VALVALSERLYSASPLEUSERASPTYRTRP
22   ASNGLNLEULEUGLUVALGLUHISLYSTYR
23   LEUHISGLUASNLYSGLUGLUPHELEULYS
24   LEUPHESERGLULYSLYSPHEILESERLEU
25   ASPASPGLYTRPSERARGLYSILELYSASP
26   SERLYSARGLYSMETGLNARGTRPGLYTYR
27   PHELYSALATHRLYSASN

Samples:

sample_1: PfPMT, [U-100% 13C; U-100% 15N], 0.5 mM; HEPES 50 mM; sodium chloride 50 mM; DTT 5 mM

sample_conditions_1: ionic strength: 0.05 M; pH: 6.9; pressure: 1 atm; temperature: 293 K

Experiments:

NameSampleSample stateSample conditions
2D 1H-15N HSQCsample_1isotropicsample_conditions_1
2D 1H-13C HSQCsample_1isotropicsample_conditions_1
3D HNCOsample_1isotropicsample_conditions_1
3D HNCAsample_1isotropicsample_conditions_1
3D HNCACBsample_1isotropicsample_conditions_1
3D CBCA(CO)NHsample_1isotropicsample_conditions_1
3D HBHA(CO)NHsample_1isotropicsample_conditions_1
3D 1H-15N NOESYsample_1isotropicsample_conditions_1
3D 1H-13C NOESYsample_1isotropicsample_conditions_1
H(C)CH TOCSYsample_1isotropicsample_conditions_1
(H)CCH TOCSYsample_1isotropicsample_conditions_1

Software:

SPARKY, Goddard - chemical shift assignment, data analysis, peak picking

NMR spectrometers:

  • Varian INOVA 800 MHz
  • Varian INOVA 600 MHz

Related Database Links:

PDB
EMBL CAD52560 CDO66214
GB AAR08195 ETW16777 ETW29426 ETW34631 ETW40564
REF XP_001350151 XP_012764798

Download simulated HSQC data in one of the following formats:
CSV: Backbone or all simulated shifts
SPARKY: Backbone or all simulated shifts