BMRB Entry 4669
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR4669
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry
Title: Structural Analysis of the Immunodominant Antigenic Region of the Hepatitis C Virus Capsid Protein by NMR
Deposition date: 2000-02-25 Original release date: 2002-04-01
Authors: Ladaviere, L.; Deleage, G.; Montserret, R.; Dalbon, P.; Jolivet, M.; Penin, F.
Citation: Ladaviere, L.; Deleage, G.; Montserret, R.; Dalbon, P.; Jolivet, M.; Penin, F.. "Structural Analysis of the Immunodominant Antigenic Region of the Hepatitis C Virus Capsid Protein by NMR" . ., .-..
Assembly members:
HEPATITIS C VIRUS CAPSID PROTEIN, polymer, 44 residues, 4900 Da.
Natural source: Common Name: hepatitis C virus Taxonomy ID: 11103 Superkingdom: viruses Kingdom: not available Genus/species: hepatitis C virus hepatitis C virus
Experimental source: Production method: chemical synthesis
Entity Sequences (FASTA):
HEPATITIS C VIRUS CAPSID PROTEIN: STNPKPQRKTKRNTNRRPQD
VKFPGGGQIVGGVYLLPRRG
PRLG
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 317 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | HCV cap(2,45) | 1 |
Entities:
Entity 1, HCV cap(2,45) 44 residues - 4900 Da.
| 1 | SER | THR | ASN | PRO | LYS | PRO | GLN | ARG | LYS | THR | ||||
| 2 | LYS | ARG | ASN | THR | ASN | ARG | ARG | PRO | GLN | ASP | ||||
| 3 | VAL | LYS | PHE | PRO | GLY | GLY | GLY | GLN | ILE | VAL | ||||
| 4 | GLY | GLY | VAL | TYR | LEU | LEU | PRO | ARG | ARG | GLY | ||||
| 5 | PRO | ARG | LEU | GLY |
Samples:
sample_1: HEPATITIS C VIRUS CAPSID PROTEIN mM; Trifluoroethanol, [U-2H], 40%; Sodium phosphate 0.01 M; NaCl 0.1 M
sample_cond_1: pH: 5.9; temperature: 293 K; ionic strength: 0.1 M
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | sample_1 | not available | sample_cond_1 |
| DQF-COSY | sample_1 | not available | sample_cond_1 |
| 2D ROESY | sample_1 | not available | sample_cond_1 |
| 2D TOCSY | sample_1 | not available | sample_cond_1 |
Software:
VNMR v5.1 - DATA COLLECTION, DATA ANALYSIS
X-PLOR v3.1 - REFINEMENT, STRUCTURE SOLUTION
NMR spectrometers:
- Varian UnityPlus 500 MHz
Related Database Links:
| BMRB | 15767 15768 |
| PDB | |
| DBJ | BAA00452 BAA00705 BAA00706 BAA00792 BAA00968 |
| EMBL | CAA03854 CAA43788 CAA43790 CAA43791 CAA43792 |
| GB | AAA16300 AAA16311 AAA20153 AAA20154 AAA21028 |
| PIR | JQ1926 |
| PRF | 2012309A 2116349AA 2116349AB 2116349AC 2116349AD |
| REF | NP_671491 NP_751919 YP_001469630 YP_001469632 YP_001469633 |
| SP | O39928 O39929 O91936 O92972 P26660 |