BMRB Entry 4787
Chem Shift validation: AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR4787
NMR-STAR file interactive viewer.
NMR-STAR v3 text file.
NMR-STAR v2.1 text file (deprecated)
XML gzip file.
RDF gzip file.
All files associated with the entry
Title: Assignment of 1H, 13C and 15N resonances of domain III of the ectodomain of apical membrane antigen 1 from Plasmodium falciparum
Deposition date: 2000-07-19 Original release date: 2001-02-14
Authors: Nair, Margie; Hodder, Anthony; Hinds, Mark; Anders, Robin; Norton, Raymond
Citation: Nair, Margie; Hodder, Anthony; Hinds, Mark; Anders, Robin; Norton, Raymond. "Letter to the Editor: Assignment of 1H, 13C and 15N resonances of domain III of the ectodomain of apical membrane antigen 1 from Plasmodium falciparum" J. Biomol. NMR 19, 85-86 (2001).
Assembly members:
Apical membrane antigen 1, polymer, 122 residues, 14330 Da.
Natural source: Common Name: malaria parasite Taxonomy ID: 5833 Superkingdom: Eukaryota Kingdom: not available Genus/species: Plasmodium falciparum
Experimental source: Production method: recombinant technology Host organism: Escherichia coli
Entity Sequences (FASTA):
Apical membrane antigen 1: MRGSHHHHHHGSEVENNFPC
SLYKDEIMKEIERESKRIKL
NDNDDEGNKKIIAPRIFISD
DKDSLKCPCDPEMVSNSTCR
FFVCKCVERRAEVTSNNEVV
VKEEYKDEYADIPEHKPTYD
KM
- assigned_chemical_shifts
| Data type | Count |
| 1H chemical shifts | 670 |
| 13C chemical shifts | 358 |
| 15N chemical shifts | 96 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | Pf AMA 1 domain III | 1 |
Entities:
Entity 1, Pf AMA 1 domain III 122 residues - 14330 Da.
| 1 | MET | ARG | GLY | SER | HIS | HIS | HIS | HIS | HIS | HIS | ||||
| 2 | GLY | SER | GLU | VAL | GLU | ASN | ASN | PHE | PRO | CYS | ||||
| 3 | SER | LEU | TYR | LYS | ASP | GLU | ILE | MET | LYS | GLU | ||||
| 4 | ILE | GLU | ARG | GLU | SER | LYS | ARG | ILE | LYS | LEU | ||||
| 5 | ASN | ASP | ASN | ASP | ASP | GLU | GLY | ASN | LYS | LYS | ||||
| 6 | ILE | ILE | ALA | PRO | ARG | ILE | PHE | ILE | SER | ASP | ||||
| 7 | ASP | LYS | ASP | SER | LEU | LYS | CYS | PRO | CYS | ASP | ||||
| 8 | PRO | GLU | MET | VAL | SER | ASN | SER | THR | CYS | ARG | ||||
| 9 | PHE | PHE | VAL | CYS | LYS | CYS | VAL | GLU | ARG | ARG | ||||
| 10 | ALA | GLU | VAL | THR | SER | ASN | ASN | GLU | VAL | VAL | ||||
| 11 | VAL | LYS | GLU | GLU | TYR | LYS | ASP | GLU | TYR | ALA | ||||
| 12 | ASP | ILE | PRO | GLU | HIS | LYS | PRO | THR | TYR | ASP | ||||
| 13 | LYS | MET |
Samples:
15N_sample: Apical membrane antigen 1, [U-90% 15N], 0.5 – 1 mM
13C_sample: Apical membrane antigen 1, [U-95% 13C[, 0.5 – 1 mM
sample_conditions_set_1: pH: 3.4; temperature: 303 K
sample_conditions_set_2: pH: 3.4; temperature: 283 K
sample_conditions_set_3: pH: 2.8; temperature: 303 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 3D 1H-1H-15N NOESY | not available | not available | not available |
| 3D 1H-1H-13C NOESY | not available | not available | not available |
| 3D 1H-1H-15N TOCSY | not available | not available | not available |
| 3D HNCA | not available | not available | not available |
| 3D HNCO | not available | not available | not available |
| 3D CBCA(CO)NH | not available | not available | not available |
| 3D CCCONH | not available | not available | not available |
| 3D 1H-13C-1H HCCH-TOCSY | not available | not available | not available |
| 3D HNHA | not available | not available | not available |
Software:
UXNMR v1.3 - Data processing
XEASY v1.3.13 - Peak assignment and analysis
NMR spectrometers:
- Bruker DRX 600 MHz
- Bruker AMX 500 MHz
Related Database Links:
| PDB | |
| DBJ | BAM85373 BAM85381 BAM85383 BAM85388 BAM85400 |
| EMBL | CAB97182 CAB97190 CAB97197 CAC34760 CAC34761 |
| GB | AAA29476 AAB36701 AAC47104 AAC47105 AAG50119 |
| REF | XP_001348015 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts