BMRB Entry 5282
Chem Shift validation: AVS_full
BMRB Entry DOI: doi:10.13018/BMR5282
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Title: Refinement of d(GCGAAGC) Hairpin Structure Using One- and Two-Bonds Residual Dipolar Couplings PubMed: 12449414
Deposition date: 2002-02-07 Original release date: 2003-02-20
Authors: Padrta, P.; Stefl, R.; Zidek, L.; Sklenar, V.
Citation: Padrta, P.; Stefl, R.; Kralik, L.; Zidek, L.; Sklenar, V.. "Refinement of d(GCGAAGC) Hairpin Structure Using One- and Two-bond Residual Dipolar Couplings" J. Biomol. NMR 24, 1-14 (2002).
Assembly members:
GCGAAGC hairpin, polymer, 7 residues, Formula weight is not available
Natural source: Common Name: Herpes simplex virus Taxonomy ID: 10294 Superkingdom: Viruses Kingdom: not available Genus/species: Simplexvirus n/a
Experimental source: Production method: vendor
Entity Sequences (FASTA):
GCGAAGC hairpin: GCGAAGC
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 35 |
| 15N chemical shifts | 9 |
| 1H chemical shifts | 68 |
| 31P chemical shifts | 6 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | 5'-D(*GP*CP*GP*AP*AP*GP*C)-3' | 1 |
Entities:
Entity 1, 5'-D(*GP*CP*GP*AP*AP*GP*C)-3' 7 residues - Formula weight is not available
| 1 | DG | DC | DG | DA | DA | DG | DC |
Samples:
sample_1: GCGAAGC hairpin 6 mM; Na phosphate buffer 10 mM; D2O 100%
sample_2: GCGAAGC hairpin 6 mM; Na phosphate buffer 10 mM; H2O 90%; D2O 10%
sample_3: GCGAAGC hairpin, [U-13C; U-15N], 0.5 mM; Na phosphate buffer 10 mM; H2O 90%; D2O 10%
condition_1: pH: 6.7; temperature: 303 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 2D NOESY | not available | not available | condition_1 |
| E-COSY | not available | not available | condition_1 |
| DQF-COSY | not available | not available | condition_1 |
| COUPLED HSQC | not available | not available | condition_1 |
| S3E E-COSY | not available | not available | condition_1 |
Software:
xwinnmr v2.6,3.0 - spectra processing
SPARKY v3.xx - assignment and integration
AMBER v6.0 - structure refinement
NMR spectrometers:
- Bruker AVANCE-DRX 500 MHz