BMRB Entry 5879
Chem Shift validation: AVS_anomalous, AVS_full, LACS
BMRB Entry DOI: doi:10.13018/BMR5879
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Title: Structure of a Type IVb pilin from Salmonella typhi and its assembly into pilus PubMed: 15159389
Deposition date: 2003-07-23 Original release date: 2004-07-23
Authors: Xu, Xing-Fu; Tan, Yih-Wan; Hackett, James; Zhang, Mingjie; Mok, Yu-Keung
Citation: Xu, Xing-Fu; Tan, Yih-Wan; Lam, L.; Hackett, James; Zhang, Mingjie; Mok, Yu-Keung. "NMR Structure of a Type IVb pilin from Salmonella typhi and its assembly into pilus" J. Biol. Chem. ., .-. (2004).
Assembly members:
S. typhi PilS, polymer, 156 residues, Formula weight is not available
Natural source: Common Name: Salmonella typhi Taxonomy ID: 601 Superkingdom: Eubacteria Kingdom: not available Genus/species: Salmonella typhi
Experimental source: Production method: recombinant technology
Entity Sequences (FASTA):
S. typhi PilS: MWGKKDAGTELTNYQTLATN
TIGMMKGVDGYAFTSGAKMT
DTLIQAGAAKGMTVSGDPAS
GSATLWNSWGGQIVVAPDTA
GGTGFNNGFTITTNKVPQSA
CVSISTGMSRSGGTSGIKIN
GNNHTDAKVTAEIASSECTA
DNGRTGTNTLVFNYNG
- assigned_chemical_shifts
| Data type | Count |
| 13C chemical shifts | 563 |
| 15N chemical shifts | 152 |
| 1H chemical shifts | 883 |
Additional metadata:
Assembly:
| Entity Assembly ID | Entity Name | Entity ID |
|---|---|---|
| 1 | S.typhi type IVb pilin | 1 |
Entities:
Entity 1, S.typhi type IVb pilin 156 residues - Formula weight is not available
| 1 | MET | TRP | GLY | LYS | LYS | ASP | ALA | GLY | THR | GLU | ||||
| 2 | LEU | THR | ASN | TYR | GLN | THR | LEU | ALA | THR | ASN | ||||
| 3 | THR | ILE | GLY | MET | MET | LYS | GLY | VAL | ASP | GLY | ||||
| 4 | TYR | ALA | PHE | THR | SER | GLY | ALA | LYS | MET | THR | ||||
| 5 | ASP | THR | LEU | ILE | GLN | ALA | GLY | ALA | ALA | LYS | ||||
| 6 | GLY | MET | THR | VAL | SER | GLY | ASP | PRO | ALA | SER | ||||
| 7 | GLY | SER | ALA | THR | LEU | TRP | ASN | SER | TRP | GLY | ||||
| 8 | GLY | GLN | ILE | VAL | VAL | ALA | PRO | ASP | THR | ALA | ||||
| 9 | GLY | GLY | THR | GLY | PHE | ASN | ASN | GLY | PHE | THR | ||||
| 10 | ILE | THR | THR | ASN | LYS | VAL | PRO | GLN | SER | ALA | ||||
| 11 | CYS | VAL | SER | ILE | SER | THR | GLY | MET | SER | ARG | ||||
| 12 | SER | GLY | GLY | THR | SER | GLY | ILE | LYS | ILE | ASN | ||||
| 13 | GLY | ASN | ASN | HIS | THR | ASP | ALA | LYS | VAL | THR | ||||
| 14 | ALA | GLU | ILE | ALA | SER | SER | GLU | CYS | THR | ALA | ||||
| 15 | ASP | ASN | GLY | ARG | THR | GLY | THR | ASN | THR | LEU | ||||
| 16 | VAL | PHE | ASN | TYR | ASN | GLY |
Samples:
sample_1: S. typhi PilS, [U-99% 13C; U-99% 15N], 1.0 mM; phosphate buffer 50 mM; Na2SO4 0.5 M
sample_2: S. typhi PilS, [U-99% 15N], 1.0 mM; phosphate buffer 50 mM; Na2SO4 0.5 M
sample_3: S. typhi PilS, [U-10% 13C], 1.0 mM; phosphate buffer 50 mM; Na2SO4 0.5 M
Ex-cond_1: ionic strength: 0.5 M; pH: 6.0 na; temperature: 303 K
Experiments:
| Name | Sample | Sample state | Sample conditions |
|---|---|---|---|
| 1H-15N HSQC | not available | not available | not available |
| HNCACB | not available | not available | not available |
| CBCA(CO)NH | not available | not available | not available |
| HNCO | not available | not available | not available |
| HN(CA)CO | not available | not available | not available |
| CC(C0)NH | not available | not available | not available |
| H(CCO)NH | not available | not available | not available |
| HCCH-TOCSY | not available | not available | not available |
| 1H-13C CT HSQC | not available | not available | not available |
Software:
NMRPipe -
NMR spectrometers:
- Bruker DRX 500 MHz
- Varian Inova 750 MHz
Related Database Links:
| PDB | |
| EMBL | CAD09325 |
| GenBank | AAC98887 AAF81215 AAO71706 AAP83037 |
| PIR | AD1028 |
| REF | NP_458635 NP_807846 |
Download simulated HSQC data in one of the following formats:
CSV: Backbone
or all simulated shifts
SPARKY: Backbone
or all simulated shifts