08-Mar-2005 00:55:55 LAM 6.5.9/MPI 2 C++/ROMIO - Indiana University ___________________________________________________________________ CYANA 1.0.6 (gnu-lam) Copyright (c) 2002 Peter Guntert Contains CANDID, copyright (c) 2002 Peter Guntert, Torsten Herrmann All rights reserved. ___________________________________________________________________ cyana> cyana> cyana> - bc019267: read lib ./cyana-zn.lib Library file "./cyana-zn.lib" read, 53 residue types. - bc019267: read seq ./bc019267.seq Sequence file "./bc019267.seq" read, 67 residues. - bc019267: peakcheck peaks=c13no,n15no,c13noar prot=bc019267 ------------------------------------------------------------ Peak list : c13no Proton list: bc019267 - peakcheck: read prot bc019267 unknown=warn Chemical shift list "bc019267.prot" read, 693 chemical shifts. - peakcheck: read peaks c13no *** WARNING: Inconsistent heavy atom assignment for peak 1783. *** WARNING: Inconsistent heavy atom assignment for peak 1784. *** WARNING: Inconsistent heavy atom assignment for peak 1785. *** WARNING: Inconsistent heavy atom assignment for peak 1786. *** WARNING: Inconsistent heavy atom assignment for peak 1901. *** WARNING: Inconsistent heavy atom assignment for peak 2591. Peak list "c13no.peaks" read, 1882 peaks, 1221 assignments. - peakcheck: atom shift unusual Atom shift limit1 - limit2 CB ARG+ 58 36.158 25.200 35.800 HZ PHE 60 5.889 6.190 7.630 HA LEU 66 2.860 3.130 5.790 QE PHE 70 7.566 5.560 7.510 CE1 HIS 75 141.656 126.600 140.400 NE ARG+ 94 111.868 78.960 89.300 6 shifts outside expected range. - peakcheck: atom shift check Atom Residue Shift Median Deviation Peaks CD PRO 37 51.741 50.962 0.816 3 HB3 PRO 37 1.983 1.986 0.324 7 HD2 PRO 37 3.862 3.722 0.140 1 HB3 PRO 43 2.027 2.026 0.288 8 HN ASP- 44 8.306 8.342 0.036 4 HG3 PRO 46 2.045 1.986 0.059 11 HB2 TYR 59 2.955 2.936 0.037 16 HA ASN 65 4.348 4.336 0.033 7 QE PHE 70 7.566 7.573 0.032 7 HG3 LYS+ 73 1.652 1.655 0.076 8 HB2 ARG+ 78 1.890 1.890 0.031 10 HB3 ARG+ 78 1.959 2.021 0.067 6 HG2 LYS+ 80 1.467 1.536 0.071 8 HB3 LEU 82 1.789 1.777 0.046 10 QD2 LEU 82 0.902 0.901 0.030 15 HB VAL 84 2.171 2.157 0.039 6 HN GLU- 85 8.223 8.241 0.033 4 HB3 GLU- 85 1.752 1.902 0.157 5 18 shifts with spread larger than tolerance. - peakcheck: peak deviations Peak Dim Deviation Atom Residue 219 1 0.071 HG2 LYS+ 80 398 3 -0.779 CD PRO 37 653 2 0.324 HB3 PRO 37 711 1 0.062 HB3 ARG+ 78 711 2 0.062 HB3 ARG+ 78 763 1 0.288 HB3 PRO 43 766 2 -0.059 HG3 PRO 46 768 2 -0.059 HG3 PRO 46 1330 2 -0.059 HG3 PRO 46 1331 2 -0.059 HG3 PRO 46 1332 1 -0.059 HG3 PRO 46 1332 2 -0.059 HG3 PRO 46 1333 1 -0.059 HG3 PRO 46 1361 1 -0.030 QD2 LEU 82 1514 1 0.032 QE PHE 70 1682 1 -0.046 HB3 LEU 82 1766 1 -0.059 HG3 PRO 46 1769 1 -0.059 HG3 PRO 46 1772 1 -0.030 HB2 TYR 59 1773 1 -0.030 HB2 TYR 59 1822 1 0.036 HN ASP- 44 1930 2 -0.076 HG3 LYS+ 73 2045 1 0.036 HN ASP- 44 2174 1 -0.042 HB3 LEU 82 2197 2 0.139 HB3 GLU- 85 2328 1 0.033 HN GLU- 85 2328 2 0.150 HB3 GLU- 85 2329 1 0.157 HB3 GLU- 85 2329 2 0.150 HB3 GLU- 85 2331 2 0.150 HB3 GLU- 85 2336 2 0.062 HB3 ARG+ 78 2337 2 0.062 HB3 ARG+ 78 2360 1 0.036 HN ASP- 44 2439 3 -0.779 CD PRO 37 2442 1 0.036 HN ASP- 44 2490 1 -0.039 HB VAL 84 2523 1 0.067 HB3 ARG+ 78 2529 1 -0.036 HB3 LEU 82 2540 1 -0.059 HG3 PRO 46 2545 1 -0.031 HB2 TYR 59 2546 1 -0.037 HB2 TYR 59 2550 1 -0.059 HG3 PRO 46 2552 1 -0.033 HA ASN 65 2570 1 0.052 HB3 ARG+ 78 2571 1 -0.031 HB2 ARG+ 78 2581 2 0.069 HG2 LYS+ 80 2582 2 0.069 HG2 LYS+ 80 2583 2 0.069 HG2 LYS+ 80 2584 1 0.071 HG2 LYS+ 80 2584 2 0.069 HG2 LYS+ 80 2601 2 -0.140 HD2 PRO 37 2601 3 -0.816 CD PRO 37 52 deviations larger than tolerance. ------------------------------------------------------------ Peak list : n15no Proton list: bc019267 - peakcheck: read prot bc019267 unknown=warn Chemical shift list "bc019267.prot" read, 693 chemical shifts. - peakcheck: read peaks n15no Peak list "n15no.peaks" read, 1011 peaks, 577 assignments. - peakcheck: atom shift check Atom Residue Shift Median Deviation Peaks HB3 PRO 46 2.238 2.187 0.051 1 HB3 LEU 50 1.315 1.272 0.074 2 HA CYSZ 56 4.201 4.174 0.034 2 HB3 CYSZ 56 3.245 3.223 0.032 3 HA ARG+ 58 4.521 4.552 0.033 2 QD1 LEU 66 0.275 0.269 0.032 5 HG2 ARG+ 71 1.690 1.671 0.038 2 HB3 LYS+ 73 1.948 1.930 0.036 2 HB2 ASP- 74 2.762 2.732 0.035 2 HG3 LYS+ 80 1.472 1.491 0.030 2 HB3 LEU 82 1.789 1.754 0.035 2 HN VAL 84 7.736 7.742 0.032 10 HB3 GLU- 85 1.752 1.902 0.150 1 HA GLN 89 4.233 4.212 0.031 2 HN ALA 96 8.021 8.023 0.035 9 HA ALA 96 4.307 4.287 0.032 3 16 shifts with spread larger than tolerance. - peakcheck: peak deviations Peak Dim Deviation Atom Residue 59 1 0.035 HN ALA 96 124 1 -0.032 HA ALA 96 203 1 -0.031 HA GLN 89 302 1 -0.036 HB3 LYS+ 73 431 1 -0.074 HB3 LEU 50 471 1 -0.034 HA CYSZ 56 524 1 -0.035 HB2 ASP- 74 532 1 -0.035 HB3 LEU 82 543 1 0.030 HG3 LYS+ 80 554 1 0.032 HN VAL 84 628 1 -0.038 HG2 ARG+ 71 655 1 0.033 HA ARG+ 58 662 1 -0.032 HB3 CYSZ 56 667 1 -0.035 HB3 LEU 82 708 1 -0.051 HB3 PRO 46 900 1 0.150 HB3 GLU- 85 1559 1 -0.032 QD1 LEU 66 17 deviations larger than tolerance. ------------------------------------------------------------ Peak list : c13noar Proton list: bc019267 - peakcheck: read prot bc019267 unknown=warn Chemical shift list "bc019267.prot" read, 693 chemical shifts. - peakcheck: read peaks c13noar *** WARNING: Inconsistent heavy atom assignment for peak 140. Peak list "c13noar.peaks" read, 232 peaks, 134 assignments. - peakcheck: atom shift check Atom Residue Shift Median Deviation Peaks HB2 PRO 43 2.347 2.319 0.036 2 HG3 PRO 46 2.045 1.973 0.072 1 CD2 HIS 51 120.175 120.575 0.400 7 HB2 CYSZ 56 2.638 2.677 0.039 1 HB3 CYSZ 56 3.245 3.212 0.033 1 HB2 TYR 59 2.955 2.921 0.034 1 6 shifts with spread larger than tolerance. - peakcheck: peak deviations Peak Dim Deviation Atom Residue 24 3 0.400 CD2 HIS 51 51 1 -0.033 HB3 CYSZ 56 88 1 -0.034 HB2 TYR 59 98 1 -0.072 HG3 PRO 46 129 1 -0.036 HB2 PRO 43 190 3 0.400 CD2 HIS 51 191 3 0.400 CD2 HIS 51 192 3 0.400 CD2 HIS 51 269 1 0.039 HB2 CYSZ 56 283 3 0.400 CD2 HIS 51 284 3 0.400 CD2 HIS 51 285 3 0.400 CD2 HIS 51 12 deviations larger than tolerance. - bc019267: read prot ./bc019267.prot Chemical shift list "./bc019267.prot" read, 693 chemical shifts. - bc019267: read peaks ./c13no.peaks assigned integrated *** WARNING: Inconsistent heavy atom assignment for peak 1783. Peak list "./c13no.peaks" read, 1216 peaks, 1216 assignments. - bc019267: peaks set volume=abs(volume) Volume of 1216 peaks set. - bc019267: atom shift check Atom Residue Shift Median Deviation Peaks CD PRO 37 51.741 50.962 0.779 2 HB3 PRO 43 2.027 2.026 0.288 8 HN ASP- 44 8.306 8.342 0.036 4 HG3 PRO 46 2.045 1.986 0.059 11 HB2 TYR 59 2.955 2.936 0.037 16 HA ASN 65 4.348 4.336 0.033 7 QE PHE 70 7.566 7.573 0.032 7 HG3 LYS+ 73 1.652 1.655 0.076 8 HB2 ARG+ 78 1.890 1.891 0.031 9 HB3 ARG+ 78 1.959 2.021 0.067 6 HG2 LYS+ 80 1.467 1.536 0.071 7 HB3 LEU 82 1.789 1.777 0.046 10 QD2 LEU 82 0.902 0.893 0.030 13 HB VAL 84 2.171 2.157 0.039 6 HN GLU- 85 8.223 8.243 0.033 3 HB3 GLU- 85 1.752 1.902 0.157 5 16 shifts with spread larger than tolerance. - bc019267: caliba bb=2.75E+06 dmax=5.5 Calibration class: backbone 405 of 1216 peaks, 405 of 1216 assignments selected. Calibration function: 2.75E+06 * 1/d**6 350 upper limits added, 4 at lower, 1 at upper limit, average 3.48 A. Calibration class: side-chain 595 of 1216 peaks, 595 of 1216 assignments selected. 595 of 1216 peaks, 595 of 1216 assignments selected. Calibration function: 4.77E+05 * 1/d**4 458 upper limits added, 30 at lower, 91 at upper limit, average 4.44 A. Calibration class: methyl 216 of 1216 peaks, 216 of 1216 assignments selected. Calibration function: 1.59E+05 * 1/d**4 197 upper limits added, 1 at lower, 20 at upper limit, average 5.14 A. - bc019267: write upl c13no_cal.upl Distance constraint file "c13no_cal.upl" written, 1005 upper limits, 1005 assignments. - bc019267: distance delete 1005 distance constraints deleted. - bc019267: read peaks ./n15no.peaks assigned integrated Peak list "./n15no.peaks" read, 577 peaks, 577 assignments. - bc019267: peaks set volume=abs(volume) Volume of 577 peaks set. - bc019267: atom shift check Atom Residue Shift Median Deviation Peaks HB3 PRO 46 2.238 2.187 0.051 1 HB3 LEU 50 1.315 1.272 0.074 2 HA CYSZ 56 4.201 4.174 0.034 2 HB3 CYSZ 56 3.245 3.223 0.032 3 HA ARG+ 58 4.521 4.552 0.033 2 HG2 ARG+ 71 1.690 1.671 0.038 2 HB3 LYS+ 73 1.948 1.930 0.036 2 HB2 ASP- 74 2.762 2.732 0.035 2 HG3 LYS+ 80 1.472 1.491 0.030 2 HB3 LEU 82 1.789 1.754 0.035 2 HN VAL 84 7.736 7.742 0.032 9 HB3 GLU- 85 1.752 1.902 0.150 1 HA GLN 89 4.233 4.212 0.031 2 HN ALA 96 8.021 8.023 0.035 9 HA ALA 96 4.307 4.287 0.032 3 15 shifts with spread larger than tolerance. - bc019267: caliba bb=7.5E+06 dmax=5.5 Calibration class: backbone 417 of 577 peaks, 417 of 577 assignments selected. Calibration function: 7.50E+06 * 1/d**6 347 upper limits added, 0 at lower, 0 at upper limit, average 3.64 A. Calibration class: side-chain 115 of 577 peaks, 115 of 577 assignments selected. 115 of 577 peaks, 115 of 577 assignments selected. Calibration function: 1.30E+06 * 1/d**4 106 upper limits added, 3 at lower, 35 at upper limit, average 5.16 A. Calibration class: methyl 45 of 577 peaks, 45 of 577 assignments selected. Calibration function: 4.34E+05 * 1/d**4 45 upper limits added, 0 at lower, 15 at upper limit, average 5.79 A. - bc019267: write upl n15no_cal.upl Distance constraint file "n15no_cal.upl" written, 498 upper limits, 498 assignments. - bc019267: distance delete 498 distance constraints deleted. - bc019267: atom shift check Atom Residue Shift Median Deviation Peaks HB3 PRO 46 2.238 2.187 0.051 1 HB3 LEU 50 1.315 1.272 0.074 2 HA CYSZ 56 4.201 4.174 0.034 2 HB3 CYSZ 56 3.245 3.223 0.032 3 HA ARG+ 58 4.521 4.552 0.033 2 HG2 ARG+ 71 1.690 1.671 0.038 2 HB3 LYS+ 73 1.948 1.930 0.036 2 HB2 ASP- 74 2.762 2.732 0.035 2 HG3 LYS+ 80 1.472 1.491 0.030 2 HB3 LEU 82 1.789 1.754 0.035 2 HN VAL 84 7.736 7.742 0.032 9 HB3 GLU- 85 1.752 1.902 0.150 1 HA GLN 89 4.233 4.212 0.031 2 HN ALA 96 8.021 8.023 0.035 9 HA ALA 96 4.307 4.287 0.032 3 15 shifts with spread larger than tolerance. - bc019267: read peaks ./c13noar.peaks assigned integrated Peak list "./c13noar.peaks" read, 133 peaks, 133 assignments. - bc019267: peaks set volume=abs(volume) Volume of 133 peaks set. - bc019267: caliba bb=9.5E+05 dmax=5.5 Calibration class: backbone 0 of 133 peaks, 0 of 133 assignments selected. Calibration function: 9.50E+05 * 1/d**6 0 upper limits added. Calibration class: side-chain 116 of 133 peaks, 116 of 133 assignments selected. 116 of 133 peaks, 116 of 133 assignments selected. Calibration function: 1.65E+05 * 1/d**4 97 upper limits added, 6 at lower, 0 at upper limit, average 5.44 A. Calibration class: methyl 17 of 133 peaks, 17 of 133 assignments selected. Calibration function: 5.50E+04 * 1/d**4 17 upper limits added, 0 at lower, 0 at upper limit, average 6.10 A. - bc019267: write upl c13no_ar_cal.upl Distance constraint file "c13no_ar_cal.upl" written, 114 upper limits, 114 assignments. - bc019267: distance delete 114 distance constraints deleted. - bc019267: read upl c13no_cal.upl Distance constraint file "c13no_cal.upl" read, 1005 upper limits, 1005 assignments. - bc019267: read upl n15no_cal.upl append Distance constraint file "n15no_cal.upl" read, 498 upper limits, 498 assignments. - bc019267: read upl c13no_ar_cal.upl append Distance constraint file "c13no_ar_cal.upl" read, 114 upper limits, 114 assignments. - bc019267: read upl zinc.upl append Distance constraint file "zinc.upl" read, 10 upper limits, 10 assignments. - bc019267: read lol zinc.lol append Distance constraint file "zinc.lol" read, 10 upper limits, 10 assignments. - bc019267: distance modify Number of modified constraints: 817 - bc019267: distance check Distance constraint Score Upper HB3 LEU 45 - HN GLY 49 13.75 Upper HB2 LEU 45 - HN GLY 49 13.75 Upper HB2 LEU 45 - HA1 GLY 49 13.75 Upper HB3 LEU 45 - HA1 GLY 49 13.75 Upper HA SER 63 - HN LYS+ 67 3.50 Upper HB3 LEU 45 - HA2 GLY 49 13.75 Upper HA PHE 70 - HB3 HIS 75 7.50 Upper HG12 ILE 61 - HD22 ASN 65 19.50 Upper HG13 ILE 61 - HB3 ASN 65 19.50 Upper HG13 ILE 61 - HD22 ASN 65 19.50 Upper HG12 ILE 61 - HD21 ASN 65 19.50 Upper HG3 PRO 46 - HB2 TYR 59 20.00 Upper HB2 PRO 46 - HB2 TYR 59 20.00 Upper HB2 PRO 46 - HB3 TYR 59 20.00 Upper HG3 PRO 46 - HB3 TYR 59 20.00 Upper HB3 PRO 46 - HB3 TYR 59 20.00 Upper HB3 PRO 46 - HB2 TYR 59 20.00 Upper HB2 CYSZ 56 - HE1 HIS 69 6.00 Upper HB3 HIS 51 - HG LEU 66 9.00 Upper HA HIS 51 - HG LEU 66 9.00 Upper QE PHE 60 - HB3 HIS 69 2.00 Upper QE PHE 60 - HB2 HIS 69 2.00 Upper HB3 CYSZ 56 - HE1 HIS 69 6.00 Upper HB2 HIS 51 - HB2 LEU 66 9.00 Upper HB3 HIS 51 - HB2 LEU 66 9.00 Upper HA1 GLY 49 - QE TYR 59 6.00 Upper HA1 GLY 49 - QD TYR 59 6.00 Upper HB2 LEU 45 - HD3 ARG+ 52 4.00 Upper HB2 LEU 45 - HD2 ARG+ 52 4.00 Upper HB2 CYS- 53 - HG LEU 66 11.00 Upper HB3 CYS- 53 - HG LEU 66 11.00 Upper HB2 CYS- 53 - HN ARG+ 58 7.00 Upper HB3 CYS- 53 - QE PHE 60 10.75 Upper HB3 CYS- 53 - HN ARG+ 58 7.00 Upper HB2 CYS- 53 - QE PHE 70 5.00 Upper HB2 HIS 51 - HG LEU 66 9.00 Upper HG12 ILE 61 - HB3 ASN 65 19.50 Upper HD3 PRO 46 - HB2 TYR 59 20.00 Upper HD3 PRO 46 - HB3 TYR 59 20.00 Upper QD PHE 60 - HB2 ASN 65 14.50 Upper HB3 HIS 51 - HB3 LEU 66 9.00 Upper HB2 HIS 51 - HB3 LEU 66 9.00 Upper HA PHE 70 - HB2 HIS 75 7.50 Upper HB3 PHE 41 - QD1 LEU 50 6.00 Upper HD2 ARG+ 78 - QD2 LEU 82 7.50 Upper HD3 ARG+ 78 - QD2 LEU 82 7.50 Upper QD2 LEU 45 - HA2 GLY 49 13.75 Upper QD2 LEU 45 - QD TYR 59 17.00 Upper QD2 LEU 45 - HA1 GLY 49 13.75 Upper HB2 CYS- 53 - QD1 LEU 66 11.00 Upper HB3 CYS- 53 - QD1 LEU 66 11.00 Upper QB ALA 55 - HE1 HIS 75 2.00 Upper HB3 PHE 41 - QD2 LEU 50 6.00 Upper HD2 HIS 75 - QD1 LEU 79 9.50 Upper HA ARG+ 52 - HN PHE 60 11.00 Upper HN ASP- 42 - HA2 GLY 48 2.00 Upper HN CYS- 53 - HN ARG+ 58 7.00 Upper HN ASP- 42 - HA1 GLY 48 2.00 Upper HN ARG+ 52 - HG LEU 66 11.00 Upper HN ARG+ 52 - QD TYR 59 15.75 Upper HN CYS- 53 - QE PHE 60 10.75 Upper HN CYS- 53 - HG LEU 66 11.00 Upper HN CYS- 53 - QD PHE 60 10.75 Upper HN GLY 49 - QE TYR 59 6.00 Upper HG13 ILE 61 - HD21 ASN 65 19.50 Upper QD1 ILE 61 - HD21 ASN 65 19.50 Upper QD1 ILE 61 - HD22 ASN 65 19.50 Upper HZ PHE 60 - HE1 HIS 69 2.00 Upper HE1 HIS 51 - HB2 SER 63 2.50 Upper HE1 HIS 51 - HB3 SER 63 2.50 Upper HA2 GLY 49 - QD TYR 59 6.00 Upper HB2 ARG+ 52 - QD TYR 59 15.75 Upper HB3 ARG+ 52 - QD TYR 59 15.75 Upper HB3 LEU 45 - QD TYR 59 17.00 Upper HB2 LEU 45 - QD TYR 59 17.00 Upper QD PHE 60 - HB3 ASN 65 14.50 Upper QD PHE 60 - HB3 LEU 66 14.25 Upper QD PHE 60 - HB2 LEU 66 14.25 Upper QD PHE 60 - HG LEU 66 14.25 Upper QD PHE 60 - HN ASN 65 14.50 Upper HA CYS- 53 - QE PHE 70 5.00 Upper QE PHE 70 - HE1 HIS 75 7.50 Upper HB3 CYS- 53 - QE PHE 70 5.00 Upper HG LEU 66 - QE PHE 70 13.75 Upper QE PHE 60 - HN LEU 66 14.25 Upper HB2 CYS- 53 - QE PHE 60 10.75 Upper QE PHE 60 - HG LEU 66 14.25 Upper QD PHE 70 - HE1 HIS 75 7.50 Upper HG LEU 66 - QD PHE 70 13.75 Upper HB2 CYS- 53 - HZ PHE 60 10.75 Upper HD2 HIS 51 - HA ASP- 62 1.50 Upper HA2 GLY 49 - QE TYR 59 6.00 Upper HD3 ARG+ 52 - QE TYR 59 15.75 Upper HD2 ARG+ 52 - QE TYR 59 15.75 Upper HB2 ARG+ 52 - QE TYR 59 15.75 Upper HB3 ARG+ 52 - QE TYR 59 15.75 Upper HG2 ARG+ 52 - QE TYR 59 15.75 Upper HG3 ARG+ 52 - QE TYR 59 15.75 Upper HB3 CYS- 53 - HZ PHE 60 10.75 Upper HA PHE 70 - HD2 HIS 75 7.50 Upper HA2 GLY 47 - HD2 HIS 51 2.75 Upper HA1 GLY 47 - HD2 HIS 51 2.75 Upper HG LEU 66 - HZ PHE 70 13.75 Upper HE1 HIS 75 - QD2 LEU 79 9.50 Upper HE1 HIS 75 - QD1 LEU 79 9.50 Upper QD1 LEU 45 - QD TYR 59 17.00 Upper QD1 LEU 45 - QE TYR 59 17.00 Upper QE TYR 87 - QB ALA 92 3.75 Upper HD2 HIS 75 - QD2 LEU 79 9.50 Upper QD TYR 87 - QB ALA 92 3.75 Upper QD2 LEU 45 - QE TYR 59 17.00 Upper ZN CYSZ 56 - NE2 HIS 69 5.00 Upper ZN CYSZ 56 - NE2 HIS 75 2.50 Upper SG CYS- 53 - NE2 HIS 75 0.00 Upper SG CYSZ 56 - NE2 HIS 75 2.50 Upper SG CYSZ 56 - NE2 HIS 69 5.00 Upper SG CYS- 53 - NE2 HIS 69 2.50 Upper NE2 HIS 69 - NE2 HIS 75 4.50 Lower ZN CYSZ 56 - NE2 HIS 69 5.00 Lower ZN CYSZ 56 - NE2 HIS 75 2.50 Lower SG CYS- 53 - NE2 HIS 69 2.50 Lower SG CYSZ 56 - NE2 HIS 75 2.50 Lower SG CYSZ 56 - NE2 HIS 69 5.00 Lower NE2 HIS 69 - NE2 HIS 75 4.50 Upper QB PHE 41 - QQD LEU 50 6.00 Upper HB2 PHE 41 - QD1 LEU 50 6.00 Upper HB2 PHE 41 - QD2 LEU 50 6.00 Upper QD PHE 41 - QQD LEU 50 6.00 Upper QE PHE 41 - QQD LEU 50 6.00 Upper HN ASP- 42 - QA GLY 48 2.00 Upper HA LEU 45 - QB TYR 59 17.00 Upper QB LEU 45 - HN GLY 49 13.75 Upper QB LEU 45 - QA GLY 49 13.75 Upper HB2 LEU 45 - HA2 GLY 49 13.75 Upper QB LEU 45 - QD ARG+ 52 4.00 Upper HB3 LEU 45 - HD2 ARG+ 52 4.00 Upper HB3 LEU 45 - HD3 ARG+ 52 4.00 Upper QB LEU 45 - QD TYR 59 17.00 Upper QQD LEU 45 - HN GLY 49 13.75 Upper QQD LEU 45 - QA GLY 49 13.75 Upper QD1 LEU 45 - HA1 GLY 49 13.75 Upper QD1 LEU 45 - HA2 GLY 49 13.75 Upper QQD LEU 45 - QD TYR 59 17.00 Upper QQD LEU 45 - QE TYR 59 17.00 Upper QB PRO 46 - QB TYR 59 20.00 Upper QG PRO 46 - QB TYR 59 20.00 Upper HG2 PRO 46 - HB2 TYR 59 20.00 Upper HG2 PRO 46 - HB3 TYR 59 20.00 Upper QG PRO 46 - QD TYR 59 20.00 Upper QD PRO 46 - QB TYR 59 20.00 Upper HD2 PRO 46 - HB2 TYR 59 20.00 Upper HD2 PRO 46 - HB3 TYR 59 20.00 Upper QA GLY 47 - HD2 HIS 51 2.75 Upper QA GLY 49 - QD TYR 59 6.00 Upper QA GLY 49 - QE TYR 59 6.00 Upper HN HIS 51 - QB PHE 60 3.75 Upper QB HIS 51 - QB LEU 66 9.00 Upper QB HIS 51 - HG LEU 66 9.00 Upper HE1 HIS 51 - QB SER 63 2.50 Upper HN ARG+ 52 - QQD LEU 66 11.00 Upper QB ARG+ 52 - QD TYR 59 15.75 Upper QB ARG+ 52 - QE TYR 59 15.75 Upper QG ARG+ 52 - QE TYR 59 15.75 Upper QD ARG+ 52 - QE TYR 59 15.75 Upper HN CYS- 53 - QQD LEU 66 11.00 Upper HA CYS- 53 - QQD LEU 66 11.00 Upper QB CYS- 53 - HN ALA 57 9.50 Upper QB CYS- 53 - HN ARG+ 58 7.00 Upper QB CYS- 53 - QE PHE 60 10.75 Upper QB CYS- 53 - HZ PHE 60 10.75 Upper QB CYS- 53 - HG LEU 66 11.00 Upper QB CYS- 53 - QQD LEU 66 11.00 Upper HB2 CYS- 53 - QD2 LEU 66 11.00 Upper HB3 CYS- 53 - QD2 LEU 66 11.00 Upper QB CYS- 53 - QD PHE 70 5.00 Upper QB CYS- 53 - QE PHE 70 5.00 Upper QB CYSZ 56 - HE1 HIS 69 6.00 Upper QB PHE 60 - HN LEU 66 14.25 Upper QB PHE 60 - QQD LEU 66 14.25 Upper QD PHE 60 - QB LEU 66 14.25 Upper QD PHE 60 - QQD LEU 66 14.25 Upper QE PHE 60 - QQD LEU 66 14.25 Upper HN ILE 61 - QB ASN 65 19.50 Upper QG2 ILE 61 - QD2 ASN 65 19.50 Upper QG1 ILE 61 - QB ASN 65 19.50 Upper HG12 ILE 61 - HB2 ASN 65 19.50 Upper HG13 ILE 61 - HB2 ASN 65 19.50 Upper QG1 ILE 61 - QD2 ASN 65 19.50 Upper QD1 ILE 61 - QD2 ASN 65 19.50 Upper QQD LEU 66 - QD PHE 70 13.75 Upper QQD LEU 66 - QE PHE 70 13.75 Upper QQD LEU 66 - HZ PHE 70 13.75 Upper HE1 HIS 69 - QB HIS 75 5.50 Upper HA PHE 70 - QB HIS 75 7.50 Upper QB PHE 70 - HD2 HIS 75 7.50 Upper QG LYS+ 73 - HN LYS+ 77 5.50 Upper QE LYS+ 73 - QG LYS+ 77 5.50 Upper HD2 HIS 75 - QQD LEU 79 9.50 Upper HE1 HIS 75 - QQD LEU 79 9.50 Upper QG ARG+ 78 - QQD LEU 82 7.50 Upper QD ARG+ 78 - QQD LEU 82 7.50 Upper HD2 ARG+ 78 - QD1 LEU 82 7.50 Upper HD3 ARG+ 78 - QD1 LEU 82 7.50 Upper QB TYR 87 - QB GLU- 91 4.00 Upper QB TYR 87 - QB ALA 92 3.75 Upper QD TYR 87 - QB GLU- 91 4.00 Upper QE TYR 87 - QB GLU- 91 4.00 Upper QG GLN 89 - HN GLU- 93 0.50 - bc019267: write upl bc019267.upl Distance constraint file "bc019267.upl" written, 808 upper limits, 808 assignments. - bc019267: read aco bc019267.aco Angle constraint file "bc019267.aco" read, 42 constraints for 42 angles. - bc019267: distance stat Residue intra short med long Total 243 229 212 133 - bc019267: calc_all 100 command=anneal steps=10000 100 structures selected. 100 random structures created (seed 35621). Structure annealed in 13 s, f = 5.62347. Structure annealed in 12 s, f = 1.62604. Structure annealed in 13 s, f = 6.17346. Structure annealed in 13 s, f = 1.16777. Structure annealed in 12 s, f = 3.14420. Structure annealed in 12 s, f = 1.38619. Structure annealed in 13 s, f = 1.56384. Structure annealed in 13 s, f = 4.20100. Structure annealed in 12 s, f = 1.69758. Structure annealed in 12 s, f = 1.25916. Structure annealed in 12 s, f = 2.21452. Structure annealed in 13 s, f = 3.43355. Structure annealed in 13 s, f = 28.4078. Structure annealed in 12 s, f = 1.77560. Structure annealed in 12 s, f = 1.78160. Structure annealed in 13 s, f = 1.10294. Structure annealed in 12 s, f = 6.79073. Structure annealed in 13 s, f = 2.86293. Structure annealed in 12 s, f = 1.63071. Structure annealed in 13 s, f = 1.51393. Structure annealed in 12 s, f = 2.46646. Structure annealed in 13 s, f = 7.58058. Structure annealed in 13 s, f = 2.08348. Structure annealed in 13 s, f = 4.37216. Structure annealed in 12 s, f = 2.86019. Structure annealed in 12 s, f = 1.02524. Structure annealed in 13 s, f = 1.18255. Structure annealed in 12 s, f = 1.31629. Structure annealed in 12 s, f = 1.02721. Structure annealed in 13 s, f = 1.72551. Structure annealed in 13 s, f = 2.21527. Structure annealed in 13 s, f = 1.35170. Structure annealed in 12 s, f = 7.28154. Structure annealed in 12 s, f = 1.57863. Structure annealed in 13 s, f = 1.54949. Structure annealed in 13 s, f = 1.75954. Structure annealed in 12 s, f = 1.43136. Structure annealed in 12 s, f = 2.08346. Structure annealed in 13 s, f = 7.59495. Structure annealed in 13 s, f = 1.58093. Structure annealed in 13 s, f = 23.6807. Structure annealed in 12 s, f = 1.63906. Structure annealed in 13 s, f = 1.64258. Structure annealed in 13 s, f = 1.45710. Structure annealed in 12 s, f = 2.23040. Structure annealed in 13 s, f = 2.30132. Structure annealed in 13 s, f = 9.95351. Structure annealed in 13 s, f = 1.16680. Structure annealed in 12 s, f = 1.18288. Structure annealed in 13 s, f = 1.28368. Structure annealed in 13 s, f = 2.97370. Structure annealed in 13 s, f = 24.0219. Structure annealed in 12 s, f = 3.41339. Structure annealed in 13 s, f = 2.81416. Structure annealed in 12 s, f = 4.71599. Structure annealed in 13 s, f = 7.45456. Structure annealed in 12 s, f = 3.05624. Structure annealed in 12 s, f = 1.19049. Structure annealed in 12 s, f = 1.23436. Structure annealed in 13 s, f = 10.5045. Structure annealed in 13 s, f = 32.6536. Structure annealed in 13 s, f = 1.39436. Structure annealed in 13 s, f = 1.41864. Structure annealed in 13 s, f = 2.19142. Structure annealed in 12 s, f = 0.993548. Structure annealed in 12 s, f = 2.29511. Structure annealed in 13 s, f = 1.22780. Structure annealed in 13 s, f = 1.18634. Structure annealed in 13 s, f = 1.83037. Structure annealed in 12 s, f = 2.22392. Structure annealed in 13 s, f = 1.02187. Structure annealed in 13 s, f = 3.56101. Structure annealed in 12 s, f = 1.57003. Structure annealed in 12 s, f = 1.83354. Structure annealed in 13 s, f = 6.39595. Structure annealed in 13 s, f = 1.85279. Structure annealed in 13 s, f = 13.5785. Structure annealed in 12 s, f = 1.38260. Structure annealed in 13 s, f = 1.54400. Structure annealed in 13 s, f = 30.1239. Structure annealed in 13 s, f = 26.6567. Structure annealed in 12 s, f = 1.25021. Structure annealed in 13 s, f = 6.14762. Structure annealed in 13 s, f = 23.2153. Structure annealed in 12 s, f = 1.33080. Structure annealed in 12 s, f = 1.21878. Structure annealed in 13 s, f = 1.37247. Structure annealed in 13 s, f = 4.96110. Structure annealed in 12 s, f = 3.79266. Structure annealed in 12 s, f = 3.01662. Structure annealed in 13 s, f = 6.01762. Structure annealed in 13 s, f = 1.50614. Structure annealed in 13 s, f = 3.45642. Structure annealed in 12 s, f = 1.86210. Structure annealed in 13 s, f = 1.35993. Structure annealed in 13 s, f = 1.40324. Structure annealed in 12 s, f = 2.09528. Structure annealed in 13 s, f = 2.24605. Structure annealed in 13 s, f = 2.15224. Structure annealed in 12 s, f = 1.58944. 100 structures finished in 320 s (3 s/structure). - bc019267: overview structures=20 range=50..78 cor pdb full vdw 20 structures selected. Structural statistics: str target upper limits lower limits van der Waals torsion angles function # sum max # sum max # sum max # sum max 1 0.99 0 2.0 0.18 0 0.3 0.09 0 0.9 0.12 0 3.2 0.66 2 1.02 0 2.0 0.18 0 0.3 0.09 0 1.1 0.12 0 5.4 1.09 3 1.03 1 1.9 0.20 0 0.3 0.09 0 0.8 0.13 0 1.2 0.55 4 1.03 0 2.2 0.18 0 0.3 0.09 0 1.0 0.13 0 4.3 1.14 5 1.10 0 2.5 0.20 0 0.3 0.09 0 1.0 0.12 0 5.8 1.17 6 1.17 1 2.5 0.22 0 0.3 0.09 0 1.5 0.11 0 6.1 1.01 7 1.17 0 2.7 0.18 0 0.3 0.09 0 1.2 0.10 0 8.3 2.34 8 1.18 0 2.5 0.18 0 0.3 0.09 0 1.5 0.12 0 7.7 3.53 9 1.18 1 2.7 0.27 0 0.3 0.08 0 1.0 0.13 0 4.0 1.00 10 1.19 0 2.5 0.19 0 0.3 0.08 0 1.2 0.18 0 3.6 1.04 11 1.19 0 2.9 0.18 0 0.3 0.09 0 1.1 0.12 0 1.5 0.40 12 1.22 2 2.6 0.28 0 0.3 0.09 0 1.2 0.13 0 4.3 1.15 13 1.23 1 2.5 0.21 0 0.3 0.09 0 1.8 0.15 0 4.0 1.14 14 1.23 1 2.7 0.22 0 0.3 0.09 1 1.1 0.21 0 5.1 1.56 15 1.25 0 2.9 0.19 0 0.3 0.09 0 1.5 0.18 0 10.1 1.88 16 1.26 2 2.8 0.35 0 0.3 0.09 0 1.0 0.13 0 1.3 0.41 17 1.28 1 2.8 0.22 0 0.3 0.08 0 1.4 0.14 0 4.8 2.35 18 1.32 1 3.3 0.23 0 0.3 0.09 0 1.4 0.14 0 4.6 1.74 19 1.33 2 3.4 0.36 0 0.3 0.09 0 1.0 0.12 0 3.0 1.11 20 1.35 0 3.8 0.19 0 0.3 0.09 0 1.4 0.13 0 3.5 1.24 Ave 1.19 1 2.7 0.22 0 0.3 0.09 0 1.2 0.13 0 4.6 1.32 +/- 0.10 1 0.5 0.05 0 0.0 0.00 0 0.3 0.03 0 2.2 0.73 Min 0.99 0 1.9 0.18 0 0.3 0.08 0 0.8 0.10 0 1.2 0.40 Max 1.35 2 3.8 0.36 0 0.3 0.09 1 1.8 0.21 0 10.1 3.53 Overview file "bc019267.ovw" written. DG coordinate file "bc019267.cor" written, 20 conformers. PDB coordinate file "bc019267.pdb" written, 20 conformers. - bc019267: ramachandran file=rama.ps nobackground label Struct fav add gen dis ------ --- --- --- --- 1 34 18 3 1 (SER 83) 2 30 21 5 0 3 38 16 1 1 (TYR 87) 4 33 17 4 2 (GLU- 91, ARG+ 94) 5 32 18 5 1 (ALA 96) 6 33 18 5 0 7 36 16 3 1 (SER 100) 8 33 18 3 2 (VAL 84, MET 98) 9 38 17 1 0 10 31 22 2 1 (MET 98) 11 35 19 1 1 (VAL 84) 12 37 17 1 1 (MET 98) 13 33 15 8 0 14 36 17 3 0 15 34 19 2 1 (VAL 84) 16 37 17 2 0 17 34 19 1 2 (ARG+ 94, MET 98) 18 34 17 4 1 (VAL 84) 19 35 16 4 1 (ARG+ 94) 20 34 13 7 2 (ARG+ 52, ARG+ 94) all 61% 31% 6% 2% *** ERROR: Cannot open input plot file "rama.grf". *** FATAL ERROR: Program aborted. LAM 6.5.9/MPI 2 C++/ROMIO - Indiana University 08-Mar-2005 01:01:34