Index of /ftp/pub/pdb/compatible/pdb_bundle
![[ICO]](/icons/blank.gif) | Name | Last modified | Size | Description |
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![[DIR]](/icons/back.gif) | Parent Directory | | - | |
![[TXT]](/icons/text.gif) | large_split_mapping.tsv | 14-May-2016 00:42 | 401K | |
| pdb_bundle_index.txt | 25-Feb-2017 01:38 | 2.5K | |
![[DIR]](/icons/folder.gif) | zs/ | 02-Sep-2016 23:35 | - | |
| ze/ | 16-May-2015 00:05 | - | |
| z8/ | 16-May-2015 00:05 | - | |
| z3/ | 25-Dec-2015 03:22 | - | |
| yz/ | 16-Oct-2015 23:37 | - | |
| yu/ | 16-Jan-2016 00:56 | - | |
| yp/ | 16-Oct-2015 23:37 | - | |
| ym/ | 04-Sep-2015 23:28 | - | |
| yd/ | 10-Oct-2015 00:34 | - | |
| yb/ | 14-Mar-2015 00:08 | - | |
| y4/ | 14-Mar-2015 00:08 | - | |
| xe/ | 21-Feb-2015 01:02 | - | |
| wz/ | 06-Jun-2015 00:34 | - | |
| ww/ | 20-Dec-2014 02:12 | - | |
| wu/ | 06-Jun-2015 00:34 | - | |
| wt/ | 14-Aug-2015 23:42 | - | |
| ws/ | 19-Dec-2015 00:23 | - | |
| wr/ | 06-Jun-2015 00:33 | - | |
| wq/ | 06-Jun-2015 00:33 | - | |
| wp/ | 24-Jan-2015 01:05 | - | |
| wo/ | 31-Jul-2015 23:33 | - | |
| wi/ | 03-Oct-2015 00:00 | - | |
| wf/ | 14-Nov-2014 23:24 | - | |
| w4/ | 16-Oct-2015 23:37 | - | |
| w2/ | 14-Nov-2014 23:24 | - | |
| vy/ | 14-Nov-2014 23:17 | - | |
| vv/ | 14-Nov-2014 21:18 | - | |
| v9/ | 14-Nov-2014 23:23 | - | |
| v8/ | 20-Dec-2014 04:37 | - | |
| v7/ | 14-Nov-2014 23:22 | - | |
| v6/ | 14-Nov-2014 23:21 | - | |
| v5/ | 17-Jan-2015 00:51 | - | |
| v4/ | 14-Nov-2014 23:19 | - | |
| v3/ | 17-Apr-2015 22:58 | - | |
| um/ | 25-Feb-2017 00:12 | - | |
| uj/ | 05-Dec-2014 11:33 | - | |
| ug/ | 06-Jun-2015 00:33 | - | |
| ud/ | 18-Jul-2015 00:22 | - | |
| u6/ | 05-Dec-2014 23:05 | - | |
| u5/ | 05-Dec-2014 23:05 | - | |
| u4/ | 07-Jan-2017 00:16 | - | |
| u3/ | 05-Dec-2014 23:00 | - | |
| u2/ | 14-Nov-2014 23:18 | - | |
| u1/ | 14-Nov-2014 23:18 | - | |
| tv/ | 14-Nov-2014 23:18 | - | |
| tu/ | 08-May-2015 23:23 | - | |
| tg/ | 14-Jan-2017 00:25 | - | |
| tc/ | 17-Dec-2016 00:21 | - | |
| tb/ | 07-Oct-2016 23:45 | - | |
| ta/ | 07-Oct-2016 23:45 | - | |
| t9/ | 07-Oct-2016 23:45 | - | |
| t6/ | 04-Feb-2017 00:56 | - | |
| t5/ | 07-Oct-2016 23:45 | - | |
| t2/ | 20-Jan-2017 23:45 | - | |
| t1/ | 07-Oct-2016 23:45 | - | |
| t0/ | 15-Oct-2016 01:26 | - | |
| qy/ | 05-Dec-2014 23:11 | - | |
| p7/ | 14-Nov-2014 23:18 | - | |
| p6/ | 14-Nov-2014 23:18 | - | |
| o9/ | 14-Nov-2014 23:18 | - | |
| nw/ | 14-Nov-2014 23:18 | - | |
| mr/ | 11-Feb-2017 00:10 | - | |
| mm/ | 07-Jan-2017 00:16 | - | |
| mg/ | 10-Dec-2016 01:19 | - | |
| md/ | 17-Dec-2016 00:21 | - | |
| mc/ | 14-Jan-2017 00:25 | - | |
| m1/ | 14-Jan-2017 00:25 | - | |
| lz/ | 26-Nov-2016 01:41 | - | |
| ly/ | 18-Nov-2016 23:46 | - | |
| lt/ | 14-Nov-2014 23:18 | - | |
| ls/ | 14-Nov-2014 23:18 | - | |
| lq/ | 14-Jan-2017 00:30 | - | |
| ln/ | 14-Nov-2014 23:18 | - | |
| li/ | 22-Dec-2016 21:53 | - | |
| lf/ | 29-Oct-2016 00:53 | - | |
| le/ | 29-Oct-2016 00:53 | - | |
| l7/ | 14-Nov-2014 23:18 | - | |
| l4/ | 02-Sep-2016 23:35 | - | |
| l3/ | 15-Jul-2016 23:47 | - | |
| kp/ | 23-Sep-2016 23:36 | - | |
| kc/ | 12-Aug-2016 23:49 | - | |
| k1/ | 10-Jan-2015 02:24 | - | |
| ju/ | 17-Feb-2017 23:57 | - | |
| jt/ | 15-Jul-2016 23:47 | - | |
| jc/ | 12-Nov-2016 00:27 | - | |
| jb/ | 23-Jan-2016 02:21 | - | |
| ja/ | 08-Aug-2015 00:26 | - | |
| j9/ | 02-Jul-2016 00:15 | - | |
| j8/ | 16-Sep-2016 23:32 | - | |
| j7/ | 16-Sep-2016 23:32 | - | |
| j6/ | 14-Nov-2014 23:17 | - | |
| j5/ | 23-Jul-2016 00:23 | - | |
| j4/ | 16-Sep-2016 23:32 | - | |
| j3/ | 07-Oct-2016 23:45 | - | |
| iv/ | 14-May-2016 00:31 | - | |
| it/ | 23-Jul-2016 00:23 | - | |
| iq/ | 30-Apr-2016 01:16 | - | |
| ip/ | 15-Jul-2016 23:47 | - | |
| im/ | 14-May-2016 00:30 | - | |
| ib/ | 21-May-2016 00:40 | - | |
| i4/ | 18-Jun-2016 00:37 | - | |
| hd/ | 02-Apr-2016 00:23 | - | |
| hc/ | 02-Apr-2016 00:23 | - | |
| ha/ | 02-Apr-2016 00:23 | - | |
| h5/ | 20-Jan-2017 23:45 | - | |
| h4/ | 20-Jan-2017 23:45 | - | |
| go/ | 30-Sep-2016 22:57 | - | |
| gm/ | 16-Sep-2016 23:32 | - | |
| gl/ | 19-Aug-2016 00:09 | - | |
| gk/ | 19-Aug-2016 00:09 | - | |
| gj/ | 02-Sep-2016 23:35 | - | |
| ga/ | 20-Feb-2016 00:01 | - | |
| fl/ | 28-Nov-2015 00:30 | - | |
| fk/ | 12-Mar-2016 00:49 | - | |
| fd/ | 23-Jan-2016 02:21 | - | |
| fc/ | 07-May-2016 00:16 | - | |
| f8/ | 30-Jan-2016 02:37 | - | |
| eu/ | 09-Sep-2016 23:29 | - | |
| ep/ | 09-Jan-2016 01:14 | - | |
| el/ | 23-Jan-2016 02:21 | - | |
| e8/ | 23-Jan-2016 02:21 | - | |
| e7/ | 23-Jan-2016 02:21 | - | |
| do/ | 25-Dec-2015 03:18 | - | |
| dg/ | 20-Jan-2017 23:45 | - | |
| df/ | 07-Oct-2016 23:45 | - | |
| dc/ | 27-May-2016 23:52 | - | |
| da/ | 24-Aug-2016 23:42 | - | |
| d8/ | 10-Oct-2015 00:34 | - | |
| d6/ | 28-Feb-2015 05:35 | - | |
| d5/ | 28-Feb-2015 05:34 | - | |
| cz/ | 07-Oct-2016 23:45 | - | |
| ct/ | 05-Dec-2014 11:32 | - | |
| co/ | 19-Sep-2015 00:54 | - | |
| c1/ | 09-Jan-2016 01:14 | - | |
| bt/ | 05-Dec-2014 11:32 | - | |
| bp/ | 05-Mar-2016 02:08 | - | |
| ap/ | 12-Dec-2015 02:05 | - | |
| aj/ | 16-May-2015 00:05 | - | |
| af/ | 07-Mar-2015 00:54 | - | |
| aa/ | 10-Oct-2015 00:34 | - | |
| a9/ | 10-Oct-2015 00:34 | - | |
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As large structures (containing >62 chains and/or 99999 ATOM lines) cannot be represented in the legacy PDB file format, data are available in the PDB archive as single PDBx/mmCIF files representing the entire structure,
and as TAR files containing a collection of best effort/minimal files in the PDB file format to support users and software tools that rely solely on the PDB file format.
In each TAR file, an entire structure is divided into several minimal files. TAR files are available in a separate directory in the PDB FTP archive (ftp://ftp.wwpdb.org/pub/pdb/compatible/pdb_bundle/)
grouped by the middle two characters of the 4-character PDB ID.
Each TAR file contains the following-
1. Best effort/minimal PDB format files that contain only authorship, citation details and coordinate data under HEADER, AUTHOR, JRNL, CRYST1, SCALEn, ATOM, HETATM records.
The following PDB records are not included in the best effort/minimal files:
OBSLTE, TITLE, CAVEAT, COMPND, SOURCE, KEYWDS, EXPDTA, REVDAT, SPRSDE, REMARKS, DBREF, SEQADV, SEQRES, MODRES, HET, HETNAM, HETSYN, FORMUL, HELIX, SHEET, SSBOND, LINK, CISPEP, SITE, ORIGXn, MTRIXn, CONECT.
2. An index file with the mapping between the chains present in the large entry and the chains present in the minimal PDB format files.
Example: Truncated best effort/minimal file for the entry 4u50
HEADER RIBOSOME 2014-07-24 XXXX
AUTHOR N.GARREAU DE LOUBRESSE, I.PROKHOROVA, G.YUSUPOVA, M.YUSUPOV
JRNL AUTH N.Garreau de Loubresse, I.Prokhorova, W.Holtkamp,
JRNL AUTH 2 M.V.Rodnina, G.Yusupova, M.Yusupov
JRNL TITL Structural basis for the inhibition of the eukaryotic
JRNL TITL 2 ribosome.
JRNL REF Nature V. 513 517 2014
JRNL REFN NATUAS UK 1476-4687
JRNL PMID 25209664
JRNL DOI 10.1038/nature13737
CRYST1 434.390 285.580 303.060 90.00 98.99 90.00 P 1 21 1 4
SCALE1 0.002302 0.000000 0.000364 0.00000
SCALE2 0.000000 0.003502 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003341 0.00000
ATOM 1 P U A 1 -88.608 31.952 64.746 1.00 81.64 P
ANISOU 1 P U A 1 5964 13260 11795 1046 -383 -1793 P
ATOM 2 OP1 U A 1 -88.681 32.341 63.314 1.00 82.66 O
ANISOU 2 OP1 U A 1 6111 13412 11886 1075 -507 -1778 O
Example: Truncated index file for the entry 4u50
New chain ID Original chain ID
4u50-pdb-bundle1.pdb:
A 2
B S0
C S1
D S2
...
An index of all large structure entries (that do not have a standard PDB format file) is updated regularly on the PDB FTP site at ftp://ftp.wwpdb.org/pub/pdb/compatible/pdb_bundle/pdb_bundle_index.txt.
This list will continue to grow as new large structures are deposited and released.