BMRB

Biological Magnetic Resonance Data Bank


A Repository for Data from NMR Spectroscopy on Proteins, Peptides, Nucleic Acids, and other Biomolecules 		Member of WWPDB

Summary of BMRB entries for NMR studies on proteins related to SARS-CoV-2 NSPs.

Note all structures currently available for SARS-CoV-2 non-structural proteins (last column) are from X-ray diffraction. BMRB and PDB accession codes are hyperlinked to their respective entries. Titles are hyperlinked to the PubMed entry for the relevant publication.

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Entry ID Description Protein/nucleic acid Protein/Domain PDB entry SARS-CoV2 homolog % Identity with SARS-CoV2 SARS-CoV2 structures
36080 NMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion Protein S/S2 5XJK S 83 6VYB, 6VXX
36074 Structural insights of a self-assembling 9-residue peptide from the C-terminal tail of the SARS corona virus E-protein in DPC and SDS micelles: A combined high and low resolution spectroscopic study Protein E/C-term. 9 aa 5XES E 100
36073 Structural insights of a self-assembling 9-residue peptide from the C-terminal tail of the SARS corona virus E-protein in DPC and SDS micelles: A combined high and low resolution spectroscopic study Protein E/C-term. 9 a 5XER E 100
36049 Structure of the SARS coronavirus E protein pentameric ion channel in LMPG micelles Protein E 5X29 E 89
30531 Structure of the SARS-Unique Domain C from the Bat Coronavirus HKU4 Protein Nsp3/SUD-C 6MWM Nsp3/SUD-C 39
30247 SARS-Unique Fold in the Rousettus Bat Coronavirus HKU9 Protein Nsp3/SUD-C 5UTV Nsp3/SUD-C 57
27177 Comprehensive structural analysis of designed incomplete polypeptide chains of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus Protein Nsp1/13-50 aa Nsp1 95
27176 Comprehensive structural analysis of designed incomplete polypeptide chains of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus Protein Nsp1/13-25 aa Nsp1 100
27169 Comprehensive structural analysis of designed incomplete polypeptide chains of the replicase nonstructural protein 1 from the severe acute respiratory syndrome coronavirus Protein Nsp1/GB1 Nsp1 33
26657 NMR assignments of the macro domain from Middle East respiratory syndrome coronavirus (MERS-CoV) Protein Nsp3/ADPR Nsp3/ADPR 44 6W6Y, 6W02
19845 Structure of a Conserved Golgi Complex-targeting Signal in Coronavirus Envelope Proteins. Protein E 2MM4 E 91
17911 NMR solution structure of C-terminal domain of SARS-CoV main protease in 2.5M urea Protein Nsp5/MPro-C 2LIZ Nsp5 97 6W63, 6Y84
17309 The solution structure of coronaviral stem-loop 2 (SL2) reveals a canonical CUYG tetraloop fold. RNA 2L6I
17251 1H, 13C and 15N resonance assignments of SARS-CoV main protease N-terminal domain. Protein Nsp5/MPro-N Nsp5 96 6W63, 6Y84
17217 Solution Structure of the C-terminal Dimerization Domain of SARS Coronavirus Nucleocapsid Protein Solved by the SAIL-NMR Method Protein N/CTD 2JW8 N 96
15511 Solution Structure of the C-terminal Dimerization Domain of SARS Coronavirus Nucleocapsid Protein Solved by the SAIL-NMR Method Protein N/CTD 2JW8 N 96
16981 NMR Structure of the SARS-CoV Nonstructural Protein 7 in Solution at pH6.5. Protein Nsp7 2KYS Nsp7 99
16613 SARS coronavirus unique domain: three-domain molecular architecture in solution and RNA binding. Protein Nsp3/SUD-MC 2KQV, 2KQW Nsp3 79
16008 Nuclear magnetic resonance structure of the nucleic acid-binding domain of severe acute respiratory syndrome coronavirus nonstructural protein 3. Protein Nsp3/SUD-MC 2KAF Nsp3 76
15723 NMR assignment of the nonstructural protein nsp3(1066-1181) from SARS-CoV Protein Nsp3/NAB (nsp3e) 2K87 Nsp3 82
15618 Nuclear magnetic resonance structure shows that the severe acute respiratory syndrome coronavirus-unique domain contains a macrodomain fold Protein Nsp3/SUD-M 2JZD Nsp3 81
15469 NMR assignment of the domain 513-651 from the SARS-CoV nonstructural protein nsp3 Protein Nsp3/SUD-M Nsp3 80
11582 NMR Structures and Localization of Potential Fusion Peptides and Pre-transmembrane Region of SARS-CoV: Implications in Membrane Fusion Protein S 2RUO S 100 6VYB, 6VXX
11581 NMR Structures and Localization of Potential Fusion Peptides and Pre-transmembrane Region of SARS-CoV: Implications in Membrane Fusion Protein S 2RUN S 94 6VYB, 6VXX
11580 NMR Structures and Localization of Potential Fusion Peptides and Pre-transmembrane Region of SARS-CoV: Implications in Membrane Fusion Protein S 2RUM S 74 6VYB, 6VXX
7019 NMR assignment of the protein nsp3a from SARS-CoV Protein Nsp3/UB1 (nsp3a) 2GRI Nsp3 79
7014 NMR assignment of the SARS-CoV protein nsp1 Protein Nsp1 2GRI Nsp1 79
6969 Solution structure of the SARS-coronavirus HR2 domain in the prefusion state Protein S 2GRI S 98 6VYB, 6VXX
6824 Solution structure of the X4 protein coded by the SARS related coronavirus reveals an immunoglobulin like fold and suggests a binding activity to integrin I domains. Protein ORF7a (X4, U122) 1YO4 ORF7a
6513 Structural genomics of the SARS coronavirus: NMR structure of the protein nsp7 Protein Nsp7 1YSY Nsp7 99
6501 Backbone dynamics of SARS-CoV Nsp9 by NMR spectroscopy Protein Nsp9 Nsp9 97
6372 Letter to the Editor: 1H, 13C and 15N resonance assignments of the N-terminal Domain of the SARS CoV Nucleocapsid Protein Protein N/NTD N 90 6M3M

NMR data on relevant small molecules

Chlorohydroquinone